Introduction | Data access and caching | Load TCGA data | Load datasets based on rules | Cleaning of duplicate samples | Association of CXCL12 expression with overall survival | Batch correction with ComBat | Non-specific probe sets | FULLVcuratedOvarianData | Available Clinical Characteristics | Summarizing the List of ExpressionSets | For non-R users | Session Info | References

Introduction | Data access and caching | Load TCGA data | Load datasets based on rules | Cleaning of duplicate samples | Association of CXCL12 expression with overall survival | Batch correction with ComBat | Non-specific probe sets | FULLVcuratedOvarianData | Available Clinical Characteristics | Summarizing the List of ExpressionSets | For non-R users | Session Info | References

Data access and caching | Load data sets | Load datasets based on rules | Non-unique gene symbols | Appendix | Available Clinical Characteristics | Summarizing the List of ExpressionSets | For non-R users | Session Info

Introduction | Data types | Case Study: Batch correction in Japanese datasets | Important options | Changing sensitivity | Use of the ExpressionSet | Parallelizing | Caching | Session Info

Introduction | Prerequisites | The database | Analysis | The curatedBreastData_pData Dataset | References