doppelgangR - Identify likely duplicate samples from genomic or meta-data
The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).
Last updated 5 months ago
immunooncologyrnaseqmicroarraygeneexpressionqualitycontrolbioconductor-package
4 stars 6.57 score 71 dependenciesffpe - Quality assessment and control for FFPE microarray expression data
Identify low-quality data using metrics developed for expression data derived from Formalin-Fixed, Paraffin-Embedded (FFPE) data. Also a function for making Concordance at the Top plots (CAT-plots).
Last updated 5 months ago
microarraygeneexpressionqualitycontrol
3.03 score 160 dependencies